Skip to content
@theislab

Theis Lab

Theis Lab at Institute of Computational Biology, Helmholtz Munich

Pinned Loading

  1. single-cell-best-practices single-cell-best-practices Public

    https://www.sc-best-practices.org

    Jupyter Notebook 1.2k 261

  2. scvelo scvelo Public

    RNA Velocity generalized through dynamical modeling

    Python 495 111

  3. scarches scarches Public

    Reference mapping for single-cell genomics

    Jupyter Notebook 401 70

  4. scib scib Public

    Benchmarking analysis of data integration tools

    Python 409 75

  5. ehrapy ehrapy Public

    Electronic Health Record Analysis with Python.

    Python 336 43

Repositories

Showing 10 of 254 repositories
  • embpy Public
    theislab/embpy’s past year of commit activity
    Python 3 MIT 0 5 1 Updated Mar 31, 2026
  • ehrapy Public

    Electronic Health Record Analysis with Python.

    theislab/ehrapy’s past year of commit activity
    Python 336 Apache-2.0 43 25 (1 issue needs help) 5 Updated Mar 31, 2026
  • gh-dashboard Public

    A dashboard of everything in the theislab GitHub repository

    theislab/gh-dashboard’s past year of commit activity
    HTML 8 0 1 0 Updated Mar 31, 2026
  • ehrapy-tutorials Public

    Tutorials for ehrapy

    theislab/ehrapy-tutorials’s past year of commit activity
    Jupyter Notebook 9 Apache-2.0 2 0 0 Updated Mar 31, 2026
  • DRVI Public

    Unsupervised Deep Disentangled Representation of Single-Cell Omics

    theislab/DRVI’s past year of commit activity
    Python 61 BSD-3-Clause 5 4 2 Updated Mar 31, 2026
  • scanpydoc Public

    Collection of Sphinx extensions similar to (but more flexible than) numpydoc

    theislab/scanpydoc’s past year of commit activity
    Python 12 GPL-3.0 5 4 0 Updated Mar 31, 2026
  • spatialdata-db Public
    theislab/spatialdata-db’s past year of commit activity
    Jupyter Notebook 10 BSD-3-Clause 1 26 3 Updated Mar 30, 2026
  • troutpy Public

    Package for the analysis of Transcripts outside segmented cells in ST data

    theislab/troutpy’s past year of commit activity
    Jupyter Notebook 28 BSD-3-Clause 2 0 2 Updated Mar 30, 2026
  • multigrate Public

    Multigrate: multiomic data integration for single-cell genomics

    theislab/multigrate’s past year of commit activity
    Python 32 BSD-3-Clause 8 6 2 Updated Mar 30, 2026
  • moscot Public

    Multi-omic single-cell optimal transport tools

    theislab/moscot’s past year of commit activity
    Python 199 BSD-3-Clause 16 31 5 Updated Mar 30, 2026
View all repositories

Most used topics

Loading…